PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00110.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 384aa    MW: 43290.1 Da    PI: 8.95
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00110.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.79.4e-241782171
                  E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                             rk+ksL+ll+++fl+l++++  +++ l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++wkg
  Sme2.5_00110.1_g00016.1 17 RKQKSLGLLCSNFLSLYNREGVETIGLDDAARRL---GV--ERRRIYDIVNVLESIGVLARKAKNRYSWKG 82
                             79*****************999************...**..****************************98 PP

2E2F_TDP74.21.4e-23151231171
                  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                              r+eksL+lltq+f+kl+ +++ ++++l+e+ak L+ +      +++k+RR+YDi+NVL++++ iek     ++k+++rw g
  Sme2.5_00110.1_g00016.1 151 RREKSLGLLTQNFVKLFLCTDVDMICLDEAAKILLGDgrppaMTRTKVRRLYDIANVLSSMKFIEKthhpeNRKPAFRWLG 231
                              689**************************************99999********************9999999******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-261383IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.5E-281782IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.44E-161780IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.2E-201882IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.9E-23147232IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.4E-31151231IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-11153232IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.1E-18153231IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MALALDPSKE SRSTYCRKQK SLGLLCSNFL SLYNREGVET IGLDDAARRL GVERRRIYDI  60
VNVLESIGVL ARKAKNRYSW KGFGAIPRTL EQLKMEGLKE NGCGFDGSSS VKGSDDDEDD  120
RDSNQITSTQ TDKLSSNSGV NSAAPPKSEN RREKSLGLLT QNFVKLFLCT DVDMICLDEA  180
AKILLGDGRP PAMTRTKVRR LYDIANVLSS MKFIEKTHHP ENRKPAFRWL GLRERSEDTS  240
VDALCANESK KRVFGTDLTN ATIKRSRVAL PMDGNLYELA RKQLLTEVKC ENLETDFHIL  300
KQEPDLTASK KSYHFGPFAP PTVSQAGVSE TDKMKRVHDW ESLASSYRPQ YHNQALKDLF  360
AHYVEAWKSW YLEVAGKNPI QLIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-37172234228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-124HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345002.10.0PREDICTED: E2F transcription factor-like E2FE isoform X2
SwissprotQ8LSZ41e-126E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLA0A0V0I5920.0A0A0V0I592_SOLCH; Putative E2F transcription factor-like E2FE-like
STRINGSolyc03g113760.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-124DP-E2F-like 1